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Items where Author, Editor or other role is "Chu, Dominique"

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Number of items: 64.

A

Allen, Nyasha, White, Lisa J., Boles, Jessica E., Williams, George T., Chu, Dominique, Ellaby, Rebecca J., Shepherd, H.J., Ng, Kendrick K. L., Blackholly, Laura R., Wilson, B., and others. (2020) Predicting the antimicrobial efficacy of hydrogen bonded, self‐associating amphiphiles. ChemMedChem, . ISSN 1860-7179. (doi:10.1002/cmdc.202000533) (KAR id:82922)
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Allen, Nyasha, White, Lisa J., Boles, Jessica E., Williams, George T., Chu, Dominique, Ellaby, Rebecca J., Shepherd, H.J., Ng, Kendrick K. L., Blackholly, Laura R., Wilson, B., and others. (2020) Towards the prediction of antimicrobial efficacy for hydrogen bonded, self-associating amphiphiles. ChemMedChem, . ISSN 1860-7179. (doi:10.1002/cmdc.202000533) (KAR id:83798)
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B

Bacho, Florian, Chu, Dominique (2021) Integrate-and-Fire Neurons for Low-Powered Pattern Recognition. In: 20th International Conference on Artificial Intelligence and Soft Computing, 20-24 Jun 2021, Zakopane, Poland. (In press) (KAR id:89756)
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Barnes, David J., Chu, Dominique (2015) Guide to Simulation and Modeling for Biosciences. Simulation Foundations, Methods and Applications . Springer, 339 pp. ISBN 978-1-4471-6761-7. E-ISBN 978-1-4471-6762-4. (doi:10.1007/978-1-4471-6762-4) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:51092)

Barnes, David J. and Chu, Dominique (2014) Evolving Parameters for a Noisy Biological System – The Impact of Alternative Approaches. In: Artificial Intelligence and Soft Computing 13th International Conference. Lecture Notes in Computer Science, 2 . Springer, Cham, Switzerland, pp. 95-106. ISBN 978-3-319-07175-6. E-ISBN 978-3-319-07176-3. (doi:10.1007/978-3-319-07176-3_9) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided) (KAR id:41515)
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Barnes, David J., Chu, Dominique (2011) Walking, hopping and jumping: a model of transcription factor dynamics on DNA. In: Advances in Artificial Life, ECAL 2011. Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems. . (KAR id:44769)
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Barnes, David J., Chu, Dominique (2010) Introduction to Modeling for Biosciences. Springer ISBN 978-1-84996-325-1. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30639)

Barnes, David J., Chu, Dominique (2010) An efficient model for investigating specific site binding of transcription factors. In: Proceedings of the 4th International Conference on Bioinformatics and Biomedical Engineering, June 18-20, Chengdu, China, 2010. . pp. 182-196. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30666)

C

Chu, Dominique, Nguyen, Huy Le (2021) Constraints on Hebbian and STDP learned weights of a spiking neuron. Neural Networks, 135 . pp. 192-200. ISSN 0893-6080. (doi:10.1016/j.neunet.2020.12.012) (KAR id:85315)
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Chu, Dominique, Spinney, Richard E. (2018) A thermodynamically consistent model of finite state machines. Journal of the Royal Society Interface Focus, 8 (6). Article Number 20180037. ISSN 2042-8898. E-ISSN 2042-8898. (doi:10.1098/rsfs.2018.0037) (KAR id:69136)
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Chu, Dominique (2018) Performance limits and trade-offs in entropy-driven biochemical computers. Journal of Theoretical Biology, 443 . pp. 1-9. ISSN 0022-5193. (doi:10.1016/j.jtbi.2018.01.022) (KAR id:59768)
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Chu, Dominique (2018) Thermodynamics of quasideterministic digital computers. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 97 (2). Article Number 022121. ISSN 1063-651X. (doi:10.1103/PhysRevE.97.022121) (KAR id:65961)
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Chu, Dominique (2016) Limited by sensing-A minimal stochastic model of the lag-phase during diauxic growth. Journal of Theoretical Biology, 414 . pp. 137-146. ISSN 0022-5193. (doi:10.1016/j.jtbi.2016.10.019) (KAR id:58272)
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Chu, Dominique, Barnes, David J. (2016) The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate. Scientific Reports, 6 . Article Number 25191. E-ISSN 2045-2322. (doi:10.1038/srep25191) (KAR id:55454)
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Chu, Dominique (2015) In silico evolution of diauxic growth. BMC Evolutionary Biology, 15 (1). Article Number 211. ISSN 1471-2148. (doi:10.1186/s12862-015-0492-0) (KAR id:50638)
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Chu, Dominique, Salykin, Anton (2015) Evolutionary pressures on the yeast transcriptome. IEEE/ACM Transactions on Computational Biology and Bioinformatics, (99). p. 1. ISSN 1545-5963. (doi:10.1109/TCBB.2015.2420554) (KAR id:48293)
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Chu, Dominique and Barnes, David J. (2015) An Ansatz for a Theory of Living Systems. In: 2015 IEEE Symposium Series on Computational Intelligence. IEEE, pp. 1087-1093. ISBN 978-1-4799-7560-0. (doi:10.1109/SSCI.2015.156) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided) (KAR id:54445)
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Chu, Dominique, Barnes, David J. (2015) Evolving strategies for single-celled organisms in multi-nutrient environments. In: Proceedings of the European Conference on Artificial Life 2015. . pp. 226-233. MIT Press (doi:10.7551/978-0-262-33027-5-ch046) (KAR id:51101)
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Chu, Dominique, Barnes, David J., Perkins, Samuel (2014) Amorphous computing in the presence of stochastic disturbances. Biosystems, 125 . pp. 32-42. ISSN 0303-2647. (doi:10.1016/j.biosystems.2014.09.010) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:43262)

Chu, Dominique, Thompson, James, von der Haar, Tobias (2014) Charting the dynamics of translation. Biosystems, 119 . pp. 1-9. ISSN 1872-8324. (doi:10.1016/j.biosystems.2014.02.005) (KAR id:41513)
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Chu, Dominique, Kazana, Eleanna, Bellanger, Noémie, Singh, Tarun, Tuite, Mick F., von der Haar, Tobias (2014) Translation elongation can control translation initiation on eukaryotic mRNAs. EMBO Journal, 33 (1). pp. 21-34. ISSN 0261-4189. (doi:10.1002/embj.201385651) (KAR id:51030)
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Chu, Dominique, Barnes, David J. (2014) Evolving Biological Systems: Evolutionary Pressure to Inefficiency. In: ALIFE 14: The Fourteenth Conference on the Synthesis and Simulation of Living Systems. 14. pp. 89-96. MIT Press (doi:10.7551/978-0-262-32621-6-ch016) (KAR id:44781)
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Chu, Dominique (2013) Evolving Parameters for a Noisy Bio-System. In: 2013 IEEE Symposium Series on Computational Intelligence, 16th - 19th April, 2013, Singapore. (KAR id:34408)
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Chu, Dominique (2013) Replaying the tape of evolution: Evolving parameters for a simple bacterial metabolism. In: IEEE CEC 2013 : IEEE Congress on Evolutionary Computation, 20th - 23rd June, 2013, Cancun, Mexico. (KAR id:34409)
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Chu, Dominique, von der Haar, Tobias (2012) The architecture of eukaryotic translation. Nucleic Acids Research, 40 (20). pp. 10098-10106. ISSN 0305-1048. (doi:10.1093/nar/gks825) (KAR id:31420)
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Chu, Dominique, Zabet, Nicolae Radu, von der Haar, Tobias (2012) A novel and versatile computational tool to model translation. Bioinformatics, 28 (2). pp. 292-293. ISSN 1367-4803. (doi:10.1093/bioinformatics/btr650) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:28963)

Chu, Dominique, Barnes, David J., von der Haar, Tobias (2011) The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae. Nucleic Acids Research, 39 (15). pp. 6705-6714. ISSN 0305-1048. (doi:10.1093/nar/gkr300) (KAR id:28074)
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Chu, Dominique (2011) Complexity: Against Systems. Theory in Biosciences, . pp. 182-196. ISSN 1431-7613. (doi:10.1007/s12064-011-0121-4) (KAR id:30776)
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Chu, Dominique, Zabet, Nicolae Radu, Hone, Andrew N.W. (2011) Optimal Parameter Settings for Information Processing in Gene Regulatory Networks. BioSystems, . pp. 182-196. (doi:10.1016/j.biosystems.2011.01.006) (KAR id:30778)
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Chu, Dominique, Barnes, David J. (2010) Modeling fimbriae mediated parasite-host interactions. Journal of Theoretical Biology, 264 (4). pp. 1169-1176. (doi:10.1016/j.jtbi.2010.03.037) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30669)

Chu, Dominique, Shih-Chi, Chu., Barigou, Mostafa (2009) Qualitative models of particle de-agglomeration. Powder Technology, 195 . ISSN 0032-5910. (doi:10.1016/j.powtec.2009.05.011) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:24131)

Chu, Dominique, Barnes, David J. (2009) Group Selection vs Multi-Level Selection: Some Example Models Using Evolutionary Games. In: Proceedings of the IEEE Congress on Evolutionary Computation (IEEE CEC'09). . (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:24136)

Chu, Dominique, Zabet, Nicolae Radu, Mitavskiy, Boris (2009) Models of transcription factor binding: Sensitivity of activation functions to model assumptions. Journal of Theoretical Biology, 257 (3). pp. 419-429. ISSN 0022-5193. (doi:10.1016/j.jtbi.2008.11.026) (KAR id:24077)
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Chu, Dominique (2008) Modes of evolution in a parasite?host interaction: Dis-entangling factors determining the evolution of regulated fimbriation in E. coli. Biosystems, 95 (1). pp. 67-74. ISSN 0303-2647. (doi:10.1016/j.biosystems.2008.07.001) (KAR id:24035)
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Chu, Dominique (2008) Criteria For Conceptual And Operational Notions of Complexity. Artificial Life, 14 (3). pp. 313-323. ISSN 1064-5462. (KAR id:23992)
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Chu, Dominique (2008) Crossover operators to control size growth in linear GP and variable length GAs. In: 2008 IEEE Congress on Evolutionary Computation. IEEE, pp. 336-343. ISBN 978-1-4244-1822-0. (doi:10.1109/CEC.2008.4630819) (KAR id:24036)
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Chu, Dominique (2008) The evolution of group-level pathogenic traits. Journal of Theoretical Biology, 253 (2). pp. 355-362. ISSN 0022-5193. (doi:10.1016/j.jtbi.2008.03.017) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:23988)

Chu, Dominique, Roobol, Joanne, Blomfield, Ian C. (2008) A theoretical interpretation of the transient sialic acid toxicity of a nanR mutant of Escherichia coli. Journal of Molecular Biology, 375 (3). pp. 875-889. ISSN 0022-2836. (doi:10.1016/j.jmb.2007.10.073) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided) (KAR id:22674)
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Chu, Dominique, Ho, W. (2007) Computational Realizations of Living Systems. Artificial Life, 13 (4). pp. 369-381. ISSN 1064-5462. (doi:10.1162/artl.2007.13.4.369) (KAR id:14540)
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Chu, Dominique (2007) Evolving Genetic Regulatory Networks for Systems Biology. In: 2007 IEEE Congress on Evolutionary Computation. IEEE, pp. 875-882. ISBN 978-1-4244-1339-3. (doi:10.1109/CEC.2007.4424562) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:13019)

Chu, Dominique, Ho, W. (2007) The Localization Hypothesis and Machines. Artificial Life, 13 (3). pp. 299-302. ISSN 1064-5462. (KAR id:14607)
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Chu, Dominique, Ho, W. (2006) A Category Theoretical Argument Against the Possibility of Artificial Life. Artificial Life, 12 (4). pp. 117-135. ISSN 1064-5462. (doi:10.1162/106454606775186392) (KAR id:14519)
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Chu, Dominique, Rowe, Jonathan, Lee, Hoong-Chien (2006) Evaluation of the current models for the evolution of bacterial DNA uptake signal sequences. Journal of Theoretical Biology, 238 (1). pp. 157-166. ISSN 0022-5193. (doi:10.1016/j.jtbi.2005.05.024) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14511)

Chu, Dominique, Blomfield, Ian C. (2006) Orientational Control is an Efficient Control Mechanism for Phase Switching in the E coli fim System. Journal of Theoretical Biology, 244 (3). pp. 541-551. ISSN 0022-5193. (doi:10.1016/j.jtbi.2006.08.016) (KAR id:14516)
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Chu, Dominique and Rowe, J. (2005) Approaching Perfect Mixing in a Simple Model of the Spread of an Infectious Disease. In: Abbass, Hussein Aly and Bossomaier, T. and Wiles, J., eds. Recent Advances in Artificial Life. Advances in Natural Computation . World Scientific Publishing, pp. 21-32. ISBN 978-981-256-615-7. E-ISBN 978-981-4478-91-5. (doi:10.1142/9789812701497_0004) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14378)

Chu, Dominique and Rowe, Jonathan (2005) A Fitness-Landscape for the Evolution of Uptake Signal Sequences on Bacterial DNA. In: Capcarrere, Mathieu S. and Freitas, Alex A. and Bentley, Peter J. and Johnson, Colin G. and Timmis, Jon, eds. Advances in Artificial Life 8th European Conference. Lecture Notes in Computer Science . Springer, Berlin, Germany, pp. 845-853. ISBN 978-3-540-28848-0. E-ISBN 978-3-540-31816-3. (doi:10.1007/11553090_85) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14279)

Chu, Dominique, Lee, Hoong-Chien, Lanaerts, Tom (2005) Evolution of DNA Uptake Signal Sequences. Artificial Life, 11 (3). pp. 317-338. ISSN 1064-5462. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14306)

Chu, Dominique, Lee, H.C., Lenaerts, Tom (2005) Emergence of Uptake Signals in Bacterial DNA. Artificial Life, 11 (3). pp. 317-338. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14370)

Chu, Dominique and Rowe, J. (2004) Spread of Vector Borne Diseases in a Population with Spatial Structure. In: Parallel Problem Solving from Nature - PPSN VIII 8th International Conference. Lecture Notes in Computer Science . Springer, Berlin, Germany, pp. 222-232. ISBN 3-540-23092-0. (doi:10.1007/978-3-540-30217-9_23) (KAR id:14097)
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Chu, Dominique, Strand, Roger, Fjelland, Ragnar (2003) Theories of Complexity. Complexity, 8 (3). pp. 19-30. (doi:10.1002/cplx.10059) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14009)

D

Deng, Yun, Fabio, de Lima-Hedayioglu, Kalfon, Jeremie, Chu, Dominique, von der Haar, Tobias (2020) Hidden patterns of codon usage bias across kingdoms. Journal of the Royal Society Interface, 17 (163). Article Number 20190819. ISSN 1742-5689. E-ISSN 1742-5662. (doi:10.1098/rsif.2019.0819) (KAR id:70473)
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Deng, Yun (2019) Novel Methods for the Computational Analysis of Codon Usage Bias. Doctor of Philosophy (PhD) thesis, University of Kent,. (KAR id:80473)
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E

Ellaby, Rebecca J., Chu, Dominique, Pepes, Antigoni, Clark, Ewan R., Hiscock, Jennifer R. (2021) Predicting the hydrolytic breakdown rates of organophosphorus chemical warfare agent simulants using association constants derived from hydrogen bonded complex formation events†. Supramolecular Chemistry, . ISSN 1061-0278. (In press) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided) (KAR id:91030)
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Ellaby, Rebecca J., Clark, Ewan R., Allen, Nyasha, Taylor, Faith, Ng, Kendrick K. L., Dimitrovski, Milan, Chu, Dominique, Mulvihill, Daniel P., Hiscock, Jennifer R. (2021) Identification of organophosphorus simulants for the development of next-generation detection technologies. Organic and Biomolecular Chemistry, 19 . pp. 2008-2014. ISSN 1477-0520. (doi:10.1039/D0OB02523B) (KAR id:85937)
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F

Fil, Jakub, Chu, Dominique (2020) Minimal spiking neuron for solving multi-label classification tasks. Neural Computation, 32 (7). pp. 1408-1429. ISSN 0899-7667. E-ISSN 1530-888X. (doi:10.1162/neco_a_01290) (KAR id:80477)
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H

Haggett, Simon J., Chu, Dominique, Marshall, Ian W. (2008) Evolving a Dynamic Predictive Coding Mechanism for Novelty Detection. Knowledge-Based Systems, 21 (3). pp. 217-224. ISSN 0950-7051. (doi:10.1016/j.knosys.2007.11.007) (KAR id:23970)
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Haggett, Simon J., Chu, Dominique, Marshall, Ian W. (2007) Evolving a Dynamic Predictive Coding Mechanism for Novelty Detection. In: Research and Development in Intelligent Systems XXIV - Proceedings of AI-2007, the Twenty-seventh SGAI International Conference on Artificial Intelligence. . pp. 167-180. Springer ISBN 978-1-84800-093-3. (KAR id:14526)
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Kamaleson, Nishanthan, Chu, Dominique, Otero, Fernando E.B. (2021) Automatic Information Extraction from Electronic Documents using Machine Learning. In: Forty-first SGAI International Conference on Artificial Intelligence, 14-16 Dec 2021, Cambridge, England. (In press) (KAR id:91696)
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L

Lenaerts, Tom, Chu, Dominique, Watson, R. (2005) Dynamical Hierarchies. Artificial Life, 11 (4). pp. 403-405. ISSN 1064-5462. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:14368)

S

Spinney, Richard E., Prokopenko, Mikhail, Chu, Dominique (2018) Information ratchets exploiting spatially structured information reservoirs. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 98 (2). Article Number 022124. ISSN 2470-0045. (doi:10.1103/PhysRevE.98.022124) (KAR id:67362)
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W

Wang, Frank Z., Chua, Leon O., Yang, Xiao, Helian, Na, Tetzlaff, Ronald, Schmidt, Schmidt, Li, Ling, Carrasco, Jose Manuel Garcia, Chen, Wanlong, Chu, Dominique and others. (2013) Adaptive Neuromorphic Architecture (ANA). Neural Networks, 45 (1). pp. 111-116. ISSN 0893-6080. (doi:10.1016/j.neunet.2013.02.009) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided) (KAR id:33638)
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Z

Zabet, Nicolae Radu, Hone, Andrew N.W., Chu, Dominique (2010) Design Principles of Transcriptional Logic Circuits. In: Artificial Life XII Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems. . pp. 182-196. MIT Press (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30641)

Zabet, Nicolae Radu, Chu, Dominique (2010) Computational limits to binary genes. Journal of the Royal Society, Interface, 7 . pp. 182-196. ISSN 1742-5689. (doi:10.1098/rsif.2009.0474) (KAR id:30663)
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Zabet, Nicolae Radu and Chu, Dominique (2010) Stochasticity and robustness in bi-stable systems. In: 2010 4th International Conference on Bioinformatics and Biomedical Engineering. IEEE Xplore, pp. 182-196. ISBN 978-1-4244-4713-8. (doi:10.1109/ICBBE.2010.5518099) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30661)

This list was generated on Fri Jan 21 19:37:56 2022 GMT.