Introduction to Modeling for Biosciences

In this book we seek to provide a detailed introduction to a range of modeling techniques that are appropriate for modeling in biosciences. The book is primarily intended for bioscientists, but will be equally useful for anybody wishing to start modeling in biosciences and related fields. The topics we discuss include agent-based models, stochastic modeling techniques, differential equations and Gillespie's stochastic simulation algorithm. Included in the book are practical introductions to a number of useful tools, such as the Maxima computer algebra system, the PRISM model checker, and the Repast Simphony agent modeling environment.