Barnes, David J., Chu, Dominique (2010) An efficient model for investigating specific site binding of transcription factors. In: Proceedings of the 4th International Conference on Bioinformatics and Biomedical Engineering, June 18-20, Chengdu, China, 2010. . pp. 182-196. (doi:10.1109/icbbe.2010.5518098) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:30666)
| The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided. | |
| Official URL: http://www.cs.kent.ac.uk/pubs/2010/3021 |
Abstract
We present an individual agent-based model of transcription factor binding to DNA. We explicitly represent every single transcription factor and every single binding site in our simulation. In order to obtain statistically significant results from our model, it is necessary to perform a large number of simulations. This has previously been hampered by the computational demands of individual agent-based models. Here we present an approach to make such simulations feasible using approaches related to dynamic memory allocations in computer systems
| Item Type: | Conference or workshop item (Paper) |
|---|---|
| DOI/Identification number: | 10.1109/icbbe.2010.5518098 |
| Uncontrolled keywords: | determinacy analysis, Craig interpolants |
| Subjects: | Q Science > QA Mathematics (inc Computing science) > QA 76 Software, computer programming, |
| Divisions: | Divisions > Division of Computing, Engineering and Mathematical Sciences > School of Computing |
| Funders: | Organisations -1 not found. |
| Depositing User: | David Barnes |
| Date Deposited: | 21 Sep 2012 09:49 UTC |
| Last Modified: | 09 Mar 2023 11:32 UTC |
| Resource URI: | https://kar.kent.ac.uk/id/eprint/30666 (The current URI for this page, for reference purposes) |
University of Kent Author Information
Barnes, David J..
| Creator's ORCID: |
 https://orcid.org/0000-0001-6073-0951
|
|---|---|
| CReDIT Contributor Roles: |
Chu, Dominique.
| Creator's ORCID: |
https://orcid.org/0000-0002-3706-2905
|
|---|---|
| CReDIT Contributor Roles: |
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