Asem, Mipeshwaree Devi, Salam, Nimaichand, Idris, Hamidah, Zhang, Xiao-Tong, Bull, Alan T., Li, Wen-Jun, Goodfellow, Michael (2020) Nocardiopsis deserti sp. nov., isolated from a high altitude Atacama Desert soil. International Journal of Systematic and Evolutionary Microbiology, . ISSN 1466-5026. E-ISSN 1466-5034. (doi:10.1099/ijsem.0.004158) (KAR id:81008)
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Official URL: https://doi.org/10.1099/ijsem.0.004158 |
Abstract
The taxonomic status of a Nocardiopsis strain, designated H13T, isolated from a high altitude Atacama Desert soil, was established by using a polyphasic approach. The strain was found to have chemotaxonomic, cultural and morphological characteristics consistent with its classification within the genus Nocardiopsis and formed a well-supported clade in the Nocardiopsis phylogenomic tree together with the type strains of Nocardiopsis alborubida, Nocardiopsis dassonvillei and Nocardiopsis synnematoformans. Strain H13T was distinguished from its closest relatives by low average nucleotide identity (93.2–94.9 %) and in silico DNA–DNA hybridization (52.5–62.4 %) values calculated from draft genome assemblies and by a range of phenotypic properties. On the basis of these results, it is proposed that the isolate be assigned to the genus Nocardiopsis as Nocardiopsis deserti sp. nov. with isolate H13T (=CGMCC 4.7585T=KCTC 49249T) as the type strain
Item Type: | Article |
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DOI/Identification number: | 10.1099/ijsem.0.004158 |
Uncontrolled keywords: | Nocardiopsis deserti sp. nov, polyphasic taxonomy, genomics, Atacama desert |
Subjects: | Q Science > QR Microbiology |
Divisions: | Divisions > Division of Natural Sciences > Biosciences |
Depositing User: | Susan Davies |
Date Deposited: | 27 Apr 2020 09:37 UTC |
Last Modified: | 05 Nov 2024 12:46 UTC |
Resource URI: | https://kar.kent.ac.uk/id/eprint/81008 (The current URI for this page, for reference purposes) |
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