Gallus GBrowse: a unified genomic database for the chicken

Schmidt, Carl J and Romanov, Michael N and Ryder, Oliver A and Magrini, Vincent and Hickenbotham, Matthew T and Glasscock, Jarret and McGrath, Sean and Mardis, Elaine R and Stein, Lincoln D (2008) Gallus GBrowse: a unified genomic database for the chicken. Nucleic Acids Research, 36 (Sup1). D719-D723. ISSN 0305-1048. (doi:10.1093%2Fnar%2Fgkm783) (Full text available)

Abstract

Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species.

Item Type: Article
Uncontrolled keywords: gene expression; functional genomics; cDNA library; map; agriculture; pathways; resource; sequence
Subjects: Q Science > QH Natural history > QH426 Genetics
Divisions: Faculties > Sciences > School of Biosciences > Biomedical Research Group
Depositing User: M. Romanov
Date Deposited: 12 Dec 2013 17:34 UTC
Last Modified: 12 Jan 2015 12:17 UTC
Resource URI: https://kar.kent.ac.uk/id/eprint/37575 (The current URI for this page, for reference purposes)
Romanov, Michael N: https://orcid.org/0000-0003-3584-4644
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