Higman, Victoria A, Płoskoń, Eliza, Thompson, Gary S., Vuister, Geerten W (2024) Perspective: on the importance of extensive, high-quality and reliable deposition of biomolecular NMR data in the age of artificial intelligence. Journal of Biomolecular NMR, . ISSN 0925-2738. E-ISSN 1573-5001. (doi:10.1007/s10858-024-00451-w) (KAR id:107686)
PDF
Publisher pdf
Language: English
This work is licensed under a Creative Commons Attribution 4.0 International License.
|
|
Download this file (PDF/676kB) |
Preview |
Request a format suitable for use with assistive technology e.g. a screenreader | |
Official URL: https://doi.org/10.1007/s10858-024-00451-w |
Abstract
Artificial intelligence (AI) models are revolutionising scientific data analysis but are reliant on large training data sets. While artificial training data can be used in the context of NMR processing and data analysis methods, relating NMR parameters back to protein sequence and structure requires experimental data. In this perspective we examine what the biological NMR community needs to do, in order to store and share its data better so that we can make effective use of AI methods to further our understanding of biological molecules. We argue, first, that the community should be depositing much more of its experimental data. In particular, we should be depositing more spectra and dynamics data. Second, the NMR data deposited needs to capture the full information content required to be able to use and validate it adequately. The NMR Exchange Format (NEF) was designed several years ago to do this. The widespread adoption of NEF combined with a new proposal for dynamics data specifications come at the right time for the community to expand its deposition of data. Third, we highlight the importance of expanding and safeguarding our experimental data repository, the Biological Magnetic Resonance Data Bank (BMRB), not only in the interests of NMR spectroscopists, but biological scientists more widely. With this article we invite others in the biological NMR community to champion increased (possibly mandatory) data deposition, to get involved in designing new NEF specifications, and to advocate on behalf of the BMRB within the wider scientific community.
Item Type: | Article |
---|---|
DOI/Identification number: | 10.1007/s10858-024-00451-w |
Uncontrolled keywords: | NMR exchange format, BMRB, NMR, Database, Dynamics |
Subjects: |
Q Science Q Science > QH Natural history |
Divisions: | Divisions > Division of Natural Sciences > Biosciences |
Funders: | Medical Research Council (https://ror.org/03x94j517) |
SWORD Depositor: | JISC Publications Router |
Depositing User: | JISC Publications Router |
Date Deposited: | 22 Nov 2024 15:23 UTC |
Last Modified: | 25 Nov 2024 15:27 UTC |
Resource URI: | https://kar.kent.ac.uk/id/eprint/107686 (The current URI for this page, for reference purposes) |
- Link to SensusAccess
- Export to:
- RefWorks
- EPrints3 XML
- BibTeX
- CSV
- Depositors only (login required):