Toseland, Christopher P, McSparron, Helen, Davies, Matthew N, Flower, Darren R (2006) PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values. Nucleic acids research, 34 (Databa). D199-203. ISSN 1362-4962. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided) (KAR id:47866)
The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided. |
Abstract
The Protein pK(a) Database (PPD) v1.0 provides a compendium of protein residue-specific ionization equilibria (pK(a) values), as collated from the primary literature, in the form of a web-accessible postgreSQL relational database. Ionizable residues play key roles in the molecular mechanisms that underlie many biological phenomena, including protein folding and enzyme catalysis. The PPD serves as a general protein pK(a) archive and as a source of data that allows for the development and improvement of pK(a) prediction systems. The database is accessed through an HTML interface, which offers two fast, efficient search methods: an amino acid-based query and a Basic Local Alignment Search Tool search. Entries also give details of experimental techniques and links to other key databases, such as National Center for Biotechnology Information and the Protein Data Bank, providing the user with considerable background information. The database can be found at the following URL: http://www.jenner.ac.uk/PPD.
Item Type: | Article |
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Subjects: | Q Science |
Divisions: | Divisions > Division of Natural Sciences > Biosciences |
Depositing User: | Chris Toseland |
Date Deposited: | 07 Apr 2015 10:50 UTC |
Last Modified: | 16 Nov 2021 10:19 UTC |
Resource URI: | https://kar.kent.ac.uk/id/eprint/47866 (The current URI for this page, for reference purposes) |
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