Skip to main content
Kent Academic Repository

Browse by Person (creator, editor, contributor, etc.)

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Item Type | Date | No Grouping
Number of items: 56.

Article

Deng, Yun and Kalfon, Jeremie and Chu, Dominique and von der Haar, Tobias (2019) Hidden patterns of codon usage bias across kingdoms. BioRxiv, . (In press) (doi:https://doi.org/10.1249/MSS.0b013e31822cb0d2) (Full text available)
[img]

Chu, Dominique (2018) A thermodynamically consistent model of finite state machines. Journal of the Royal Society Interface Focus, . ISSN 2042-8898. E-ISSN 2042-8898. (doi:https://doi.org/10.1098/rsfs.2018.0037) (Full text available)
[img]
Preview

Spinney, Richard E. and Prokopenko, Mikhail and Chu, Dominique (2018) Information ratchets exploiting spatially structured information reservoirs. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 98 (2). ISSN 2470-0045. (doi:https://doi.org/10.1103/PhysRevE.98.022124) (Full text available)
[img]
Preview

Chu, Dominique (2018) Performance limits and trade-offs in entropy-driven biochemical computers. Journal of Theoretical Biology, 443 . pp. 1-9. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2018.01.022) (Full text available)
[img]
Preview
[img]
Preview

Chu, Dominique (2018) The thermodynamics of quasi-deterministic digital computers. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, 97 (2). ISSN 1063-651X. (doi:https://doi.org/10.1103/PhysRevE.97.022121) (Full text available)
[img]
Preview

Chu, Dominique (2016) Limited by sensing-A minimal stochastic model of the lag-phase during diauxic growth. Journal of Theoretical Biology, 414 . pp. 137-146. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2016.10.019) (Full text available)
[img]
Preview

Chu, Dominique and Barnes, David J. (2016) The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate. Scientific Reports, 6 . p. 25191. ISSN 2045-2322. (doi:https://doi.org/10.1038/srep25191) (Full text available)
[img]
Preview

Chu, Dominique (2015) In silico evolution of diauxic growth. BMC evolutionary biology, 15 (1). ISSN 1471-2148. (doi:https://doi.org/10.1186/s12862-015-0492-0) (Full text available)
[img]
Preview
[img]
Preview

Chu, Dominique and Salykin, Anton (2015) Evolutionary pressures on the yeast transcriptome. IEEE/ACM Transactions on Computational Biology and Bioinformatics, (99). p. 1. ISSN 1545-5963. (doi:https://doi.org/10.1109/TCBB.2015.2420554) (Full text available)
[img]
Preview

Chu, Dominique and Barnes, David J. and Perkins, Samuel (2014) Amorphous computing in the presence of stochastic disturbances. Biosystems, 125 . pp. 32-42. ISSN 0303-2647. (doi:https://doi.org/10.1016/j.biosystems.2014.09.010) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Thompson, James and von der Haar, Tobias (2014) Charting the dynamics of translation. Bio Systems, 119 (1). pp. 1-9. ISSN 1872-8324. (doi:https://doi.org/10.1016/j.biosystems.2014.02.005) (Full text available)
[img]
Preview

Chu, Dominique and Kazana, Eleanna and Bellanger, Noémie and Singh, Tarun and Tuite, Mick F. and von der Haar, Tobias (2014) Translation elongation can control translation initiation on eukaryotic mRNAs. EMBO Journal, 33 (1). pp. 21-34. ISSN 0261-4189. (doi:https://doi.org/10.1002/embj.201385651) (Full text available)
[img]
Preview

Wang, Frank Z. and Chua, Leon O. and Yang, Xiao and Helian, Na and Tetzlaff, Ronald and Schmidt, Schmidt and Li, Ling and Carrasco, Jose Manuel Garcia and Chen, Wanlong and Chu, Dominique (2013) Adaptive Neuromorphic Architecture (ANA). Neural Networks, 45 (1). pp. 111-116. ISSN 0893-6080. (doi:https://doi.org/10.1016/j.neunet.2013.02.009) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided)
[img]

Chu, Dominique and von der Haar, Tobias (2012) The architecture of eukaryotic translation. Nucleic Acids Research, 40 (20). pp. 10098-10106. ISSN 0305-1048. (doi:https://doi.org/10.1093/nar/gks825) (Full text available)
[img]
Preview

Chu, Dominique and Zabet, Nicolae Radu and von der Haar, Tobias (2012) A novel and versatile computational tool to model translation. Bioinformatics, 28 (2). pp. 292-293. ISSN 1367-4803. (doi:https://doi.org/10.1093/bioinformatics/btr650) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Barnes, David J. and von der Haar, Tobias (2011) The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae. Nucleic Acids Research, 39 (15). pp. 6705-6714. ISSN 0305-1048. (doi:https://doi.org/10.1093/nar/gkr300) (Full text available)
[img]
Preview

Chu, Dominique (2011) Complexity: Against Systems. Theory in Biosciences, . pp. 182-196. ISSN 1431-7613. (doi:https://doi.org/10.1007/s12064-011-0121-4) (Full text available)
[img]
Preview

Chu, Dominique and Zabet, Nicolae Radu and Hone, Andrew N.W. (2011) Optimal Parameter Settings for Information Processing in Gene Regulatory Networks. BioSystems, . pp. 182-196. (doi:https://doi.org/10.1016/j.biosystems.2011.01.006) (Full text available)
[img]
Preview

Zabet, Nicolae Radu and Chu, Dominique (2010) Computational limits to binary genes. Journal of the Royal Society, Interface, 7 . pp. 182-196. ISSN 1742-5689. (doi:https://doi.org/10.1098/rsif.2009.0474) (Full text available)
[img]
Preview

Chu, Dominique and Barnes, David J. (2010) Modeling fimbriae mediated parasite-host interactions. Journal of Theoretical Biology, 264 (4). pp. 1169-1176. (doi:https://doi.org/10.1016/j.jtbi.2010.03.037) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Shih-Chi, Chu. and Barigou, Mostafa (2009) Qualitative models of particle de-agglomeration. Powder Technology, 195 . ISSN 0032-5910. (doi:https://doi.org/10.1016/j.powtec.2009.05.011) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Zabet, Nicolae Radu and Mitavskiy, Boris (2009) Models of transcription factor binding: Sensitivity of activation functions to model assumptions. Journal of Theoretical Biology, 257 (3). pp. 419-429. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2008.11.026) (Full text available)
[img]
Preview

Chu, Dominique (2008) Modes of evolution in a parasite?host interaction: Dis-entangling factors determining the evolution of regulated fimbriation in E. coli. Biosystems, 95 (1). pp. 67-74. ISSN 0303-2647. (doi:https://doi.org/10.1016/j.biosystems.2008.07.001) (Full text available)
[img]
Preview

Chu, Dominique (2008) Criteria For Conceptual And Operational Notions of Complexity. Artificial Life, 14 (3). pp. 313-323. ISSN 1064-5462. (Full text available)
[img]
Preview

Haggett, Simon J. and Chu, Dominique and Marshall, Ian W. (2008) Evolving a Dynamic Predictive Coding Mechanism for Novelty Detection. Knowledge-Based Systems, 21 . pp. 217-224. (Full text available)
[img]
Preview

Chu, Dominique (2008) The evolution of group-level pathogenic traits. Journal of Theoretical Biology, 253 (2). pp. 355-362. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2008.03.017) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Roobol, Joanne and Blomfield, Ian C. (2008) A theoretical interpretation of the transient sialic acid toxicity of a nanR mutant of Escherichia coli. Journal of Molecular Biology, 375 (3). pp. 875-889. ISSN 0022-2836. (doi:https://doi.org/10.1016/j.jmb.2007.10.073) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided)
[img]

Chu, Dominique and Ho, W. (2007) Computational Realizations of Living Systems. Artificial Life, 13 (4). pp. 369-381. ISSN 1064-5462. (doi:https://doi.org/10.1162/artl.2007.13.4.369) (Full text available)
[img]
Preview

Chu, Dominique and Ho, W. (2007) The Localization Hypothesis and Machines. Artificial Life, 13 (3). pp. 299-302. ISSN 1064-5462. (Full text available)
[img]
Preview

Chu, Dominique and Ho, W. (2006) A Category Theoretical Argument Against the Possibility of Artificial Life. Artificial Life, 12 (4). pp. 117-135. ISSN 1064-5462. (doi:https://doi.org/10.1162/106454606775186392) (Full text available)
[img]
Preview

Chu, Dominique and Rowe, Jonathan and Lee, Hoong-Chien (2006) Evaluation of the current models for the evolution of bacterial DNA uptake signal sequences. Journal of Theoretical Biology, 238 (1). pp. 157-166. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2005.05.024) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Blomfield, Ian C. (2006) Orientational Control is an Efficient Control Mechanism for Phase Switching in the E coli fim System. Journal of Theoretical Biology, 244 (3). pp. 541-551. ISSN 0022-5193. (doi:https://doi.org/10.1016/j.jtbi.2006.08.016) (Full text available)
[img]
Preview

Chu, Dominique and Lee, Hoong-Chien and Lanaerts, Tom (2005) Evolution of DNA Uptake Signal Sequences. Artificial Life, 11 (3). pp. 317-338. ISSN 1064-5462. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Lenaerts, Tom and Chu, Dominique and Watson, R. (2005) Dynamical Hierarchies. Artificial Life, 11 (4). pp. 403-405. ISSN 1064-5462. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Lee, H.C. and Lenaerts, Tom (2005) Emergence of Uptake Signals in Bacterial DNA. Artificial Life, 11 (3). pp. 317-338. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Strand, Roger and Fjelland, Ragnar (2003) Theories of Complexity. Complexity, 8 (3). pp. 19-30. (doi:https://doi.org/10.1002/cplx.10059) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Book section

Chu, Dominique and Rowe, J. (2005) A Fitness-Landscape for the Evolution of Uptake Signal Sequences on Bacterial DNA. In: Capcarrere, Mathieu S. and Freitas, Alex A. and Bentley, Peter J. and Johnson, Colin G. and Timmis, Jon, eds. Advances in Artificial Life. Springer, Berlin, pp. 845-853. ISBN 978-3-540-28848-0. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Conference or workshop item

Chu, Dominique and Barnes, David J. (2015) An Ansatz for a Theory of Living Systems. In: 2015 IEEE Symposium Series on Computational Intelligence. IEEE pp. 1087-1093. ISBN 978-1-4799-7560-0. (doi:https://doi.org/10.1109/SSCI.2015.156) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided)
[img]

Chu, Dominique and Barnes, David J. (2015) Evolving strategies for single-celled organisms in multi-nutrient environments. In: Proceedings of the European Conference on Artificial Life 2015. MIT Press pp. 226-233. (doi:https://doi.org/10.7551/978-0-262-33027-5-ch046) (Full text available)
[img]
Preview

Chu, Dominique and Barnes, David J. (2014) Evolving Biological Systems: Evolutionary Pressure to Inefficiency. In: ALIFE 14: The Fourteenth Conference on the Synthesis and Simulation of Living Systems. MIT Press pp. 89-96. (doi:https://doi.org/10.7551/978-0-262-32621-6-ch016) (Full text available)
[img]
Preview

Barnes, David J. and Chu, Dominique (2014) Evolving Parameters for a Noisy Biological System – The Impact of Alternative Approaches. In: Artificial Intelligence and Soft Computing: Part II. Lecture Notes in Computer Science, 8468. Springer International Publishing pp. 95-106. ISBN 978-3-319-07175-6. E-ISBN 978-3-319-07176-3. (doi:https://doi.org/10.1007/978-3-319-07176-3_9) (Access to this publication is currently restricted. You may be able to access a copy if URLs are provided)
[img]

Chu, Dominique (2013) Evolving Parameters for a Noisy Bio-System. In: 2013 IEEE Symposium Series on Computational Intelligence, 16th - 19th April, 2013, Singapore. (Full text available)
[img]
Preview

Chu, Dominique (2013) Replaying the tape of evolution: Evolving parameters for a simple bacterial metabolism. In: IEEE CEC 2013 : IEEE Congress on Evolutionary Computation, 20th - 23rd June, 2013, Cancun, Mexico. (Full text available)
[img]
Preview

Barnes, David J. and Chu, Dominique (2011) Walking, hopping and jumping: a model of transcription factor dynamics on DNA. In: Advances in Artificial Life, ECAL 2011. Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems. (Full text available)
[img]
Preview

Zabet, Nicolae Radu and Hone, Andrew N.W. and Chu, Dominique (2010) Design Principles of Transcriptional Logic Circuits. In: Artificial Life XII Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems. MIT Press pp. 182-196. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Zabet, Nicolae Radu and Chu, Dominique (2010) Stochasticity and robustness in bi-stable systems. In: Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on, June 18-20, Chengdu. (doi:https://doi.org/10.1109/ICBBE.2010.5518099) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Barnes, David J. and Chu, Dominique (2010) An efficient model for investigating specific site binding of transcription factors. In: Proceedings of the 4th International Conference on Bioinformatics and Biomedical Engineering, June 18-20, Chengdu, China, 2010. pp. 182-196. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Barnes, David J. (2009) Group Selection vs Multi-Level Selection: Some Example Models Using Evolutionary Games. In: Proceedings of the IEEE Congress on Evolutionary Computation (IEEE CEC'09). (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique (2008) Crossover operators to control size growth in linear GP and variable length GAs. In: IEEE Congress on Evolutionary Computation (IEEE CEC 2008). IEEE, USA pp. 336-343. ISBN 978-1-4244-1822-0. (doi:https://doi.org/10.1109/CEC.2008.4630819) (Full text available)
[img]
Preview

Haggett, Simon J. and Chu, Dominique and Marshall, Ian W. (2007) Evolving a Dynamic Predictive Coding Mechanism for Novelty Detection. In: Research and Development in Intelligent Systems XXIV - Proceedings of AI-2007, the Twenty-seventh SGAI International Conference on Artificial Intelligence. Springer pp. 167-180. ISBN 978-1-84800-093-3. (Full text available)
[img]
Preview

Chu, Dominique (2007) Evolving Genetic Regulatory Networks for Systems Biology. In: Proceedings of IEEE Congress on Evolutionary Computation 2007, Singapore, Sept 25-27 2007. pp. 875-882. ISBN 978-1-4244-1339-3. (doi:https://doi.org/10.1109/CEC.2007.4424562) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Rowe, J. (2005) Approaching Perfect Mixing in a Simple Model of the Spread of an Infectious Disease. In: Abbass, Hussein Aly and Bossomaier, T. and Wiles, J., eds. Recent Advances in Artificial Life: Proceedings of the Second Australian Conference on Artificial Life (ACAL 2005). World Scientific pp. 21-32. ISBN 981-256-615-5. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique and Rowe, J. (2004) Spread of Vector Borne Diseases in a Population with Spatial Structure. In: In Proceedings of PPSN VIII - Eighth International Conference on Parallel Problem Solving from Nature. Lecture Notes in Computer Science, 3242 (3242). Springer-Verlag pp. 222-232. ISBN 3-540-23092-0. (Full text available)
[img]
Preview

Book

Barnes, David J. and Chu, Dominique (2015) Guide to Simulation and Modeling for Biosciences. Simulation Foundations, Methods and Applications . Springer, 339 pp. ISBN 978-1-4471-6761-7. E-ISBN 978-1-4471-6762-4. (doi:https://doi.org/10.1007/978-1-4471-6762-4) (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Chu, Dominique (2013) The Science Myth: God, society, the self and what we will never know. Iff Books, London, 437 pp. ISBN 1-78279-047-0. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

Barnes, David J. and Chu, Dominique (2010) Introduction to Modeling for Biosciences. Springer ISBN 978-1-84996-325-1. (The full text of this publication is not currently available from this repository. You may be able to access a copy if URLs are provided)

This list was generated on Mon May 27 17:39:54 2019 BST.