An efficient model for investigating specific site binding of transcription factors

Barnes, David J. and Chu, Dominique (2010) An efficient model for investigating specific site binding of transcription factors. In: Proceedings of the 4th International Conference on Bioinformatics and Biomedical Engineering, June 18-20, Chengdu, China, 2010. (The full text of this publication is not available from this repository)

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Official URL
http://www.cs.kent.ac.uk/pubs/2010/3021

Abstract

We present an individual agent-based model of transcription factor binding to DNA. We explicitly represent every single transcription factor and every single binding site in our simulation. In order to obtain statistically significant results from our model, it is necessary to perform a large number of simulations. This has previously been hampered by the computational demands of individual agent-based models. Here we present an approach to make such simulations feasible using approaches related to dynamic memory allocations in computer systems

Item Type: Conference or workshop item (Paper)
Uncontrolled keywords: determinacy analysis, Craig interpolants
Subjects: Q Science > QA Mathematics (inc Computing science) > QA 76 Software, computer programming,
Divisions: Faculties > Science Technology and Medical Studies > School of Computing > Computational Intelligence Group
Depositing User: David Barnes
Date Deposited: 21 Sep 2012 09:49
Last Modified: 25 Nov 2014 11:14
Resource URI: http://kar.kent.ac.uk/id/eprint/30666 (The current URI for this page, for reference purposes)
ORCiD (Barnes, David J.):
ORCiD (Chu, Dominique):
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